DICOM4MICCAI Hands-on
  • Introduction
  • Prerequisites
    • If you are attending the tutorial in-person
    • If you are following on your own
  • Using DICOM to store your analysis results
    • Using 3D Slicer to convert non-DICOM segmentation results
    • DICOM Structured Reporting for radiomics
    • Using 3D Slicer for storing analysis results in DICOM
      • Step 0: 3D Slicer interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 3.1:QuantitativeReporting interface overview
      • Step 3.2: Create and initialize a new segment
      • Step 3.3: Segment the lesions
      • Step 4: Explore and store the analysis results in DICOM
      • Step 5: Reload the analysis results from DICOM
      • Exporting DICOM data from 3D Slicer
    • Using MITK Workbench for storing segmentation results in DICOM
      • Step 0: MITK interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 4: Explore and store the segmentations in DICOM
      • Step 5: Reload the segmentations from DICOM
  • DICOM data wrangling
  • Further reading
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  1. Using DICOM to store your analysis results
  2. Using MITK Workbench for storing segmentation results in DICOM

Step 2: Load DICOM image

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Last updated 6 years ago

Now that the DICOM images are indexed in the MITK DICOM database we can open the individual image series. In the DICOM Browser window, select the item QIN-HEADNECK-01-0024 in the patient list, and the only image series with modality PT (Positron Emission Tomography, or PET). To load an image double click on it or select it and press the View button.

The image will be loaded and appear in the Data Manager on the left side. A prompt might appear if there are multiple readers available. Just use the reader selected by default and hit OK. Once the image is loaded, you should automatically see it in the 2D render windows and the 3D render window. If not right click on the image in the Data Manager and select Global Reinit.