DICOM4MICCAI Hands-on
  • Introduction
  • Prerequisites
    • If you are attending the tutorial in-person
    • If you are following on your own
  • Using DICOM to store your analysis results
    • Using 3D Slicer to convert non-DICOM segmentation results
    • DICOM Structured Reporting for radiomics
    • Using 3D Slicer for storing analysis results in DICOM
      • Step 0: 3D Slicer interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 3.1:QuantitativeReporting interface overview
      • Step 3.2: Create and initialize a new segment
      • Step 3.3: Segment the lesions
      • Step 4: Explore and store the analysis results in DICOM
      • Step 5: Reload the analysis results from DICOM
      • Exporting DICOM data from 3D Slicer
    • Using MITK Workbench for storing segmentation results in DICOM
      • Step 0: MITK interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 4: Explore and store the segmentations in DICOM
      • Step 5: Reload the segmentations from DICOM
  • DICOM data wrangling
  • Further reading
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  1. Using DICOM to store your analysis results
  2. Using 3D Slicer for storing analysis results in DICOM

Step 0: 3D Slicer interface basics

PreviousUsing 3D Slicer for storing analysis results in DICOMNextStep 1: Import DICOM data

Last updated 6 years ago

3D Slicer is a versatile platform that has many different capabilities. These capabilities are implemented in Slicer modules, and utilize common elements of the Slicer interface:

  • Toolbar provides you with the active module selector, and shortcuts to the most commonly used modules and functionalities

  • Active module panel shows the user interface for the module currently selected

  • 2D and 3D viewers are used to visualize 2D reformats of the image data with the various overlays (segmentations, annotations, intersections with models), and the 3D views of the data (volume rendering, model surfaces, annotations), respectively

In this tutorial we will use just 2 modules of 3D Slicer:

  • DICOM Browser module to load the DICOM datasets

  • Quantitative Reporting to perform segmentation and quantitation of the DICOM images