DICOM4MICCAI Hands-on
  • Introduction
  • Prerequisites
    • If you are attending the tutorial in-person
    • If you are following on your own
  • Using DICOM to store your analysis results
    • Using 3D Slicer to convert non-DICOM segmentation results
    • DICOM Structured Reporting for radiomics
    • Using 3D Slicer for storing analysis results in DICOM
      • Step 0: 3D Slicer interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 3.1:QuantitativeReporting interface overview
      • Step 3.2: Create and initialize a new segment
      • Step 3.3: Segment the lesions
      • Step 4: Explore and store the analysis results in DICOM
      • Step 5: Reload the analysis results from DICOM
      • Exporting DICOM data from 3D Slicer
    • Using MITK Workbench for storing segmentation results in DICOM
      • Step 0: MITK interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 4: Explore and store the segmentations in DICOM
      • Step 5: Reload the segmentations from DICOM
  • DICOM data wrangling
  • Further reading
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  1. Using DICOM to store your analysis results
  2. Using 3D Slicer for storing analysis results in DICOM

Step 3: Segment lesions

PreviousStep 2: Load DICOM imageNextStep 3.1:QuantitativeReporting interface overview

Last updated 6 years ago

We will use the QuantitativeReporting for the subsequent steps to annotate the loaded PET SUV image with the segmentations of the lesions, and to calculate segmentation-based measurements.

Select the QuantitativeReporting module in the module selector. You can click the magnifying glass icon to the left of the module selector and start typing the module name to quickly locate it.

Follow the steps below to familiarize yourself with the user interface of the QuantitativeReporting module and complete the segmentation.

QuantitativeReporting interface overview
Create and initialize a new segment
Segment the lesions