DICOM4MICCAI Hands-on
  • Introduction
  • Prerequisites
    • If you are attending the tutorial in-person
    • If you are following on your own
  • Using DICOM to store your analysis results
    • Using 3D Slicer to convert non-DICOM segmentation results
    • DICOM Structured Reporting for radiomics
    • Using 3D Slicer for storing analysis results in DICOM
      • Step 0: 3D Slicer interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 3.1:QuantitativeReporting interface overview
      • Step 3.2: Create and initialize a new segment
      • Step 3.3: Segment the lesions
      • Step 4: Explore and store the analysis results in DICOM
      • Step 5: Reload the analysis results from DICOM
      • Exporting DICOM data from 3D Slicer
    • Using MITK Workbench for storing segmentation results in DICOM
      • Step 0: MITK interface basics
      • Step 1: Import DICOM data
      • Step 2: Load DICOM image
      • Step 3: Segment lesions
      • Step 4: Explore and store the segmentations in DICOM
      • Step 5: Reload the segmentations from DICOM
  • DICOM data wrangling
  • Further reading
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  1. Using DICOM to store your analysis results
  2. Using MITK Workbench for storing segmentation results in DICOM

Step 0: MITK interface basics

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Last updated 6 years ago

The MITK Workbench is a free and user-friendly application built upon the MITK toolkit. Use it to efficiently analyze and visualize medical image data from a wide range of imaging modalities like CT, MR, US, PET, and DICOM-RT. The interface is structured in three main areas:

  • Toolbar On the upper border you find the Toolbar. With the left buttons you can choose between the main functions (e.g. open file, save/close project,...) On the right side you find the Plugins to work on your data.

  • Active plugins At each sides of the window, the tools you're using can be opened. In MITK they're called Plugins.

  • Display Your images and results appear in the Display area in 2D and 3D views.

In this tutorial we use only two plugins:

  • DICOM Browser module to load the DICOM datasets

  • Segmentation to perform segmentation