brainmask-dcmspace.nii.gz
lhrh-dcmspace.nii.gz
lhrh-dcmspace.nii.gz
gmwm-dcmspace.nii.gz
gmwm-dcmspace.nii.gz
dcmqi
to populate the metadata JSON file: http://qiicr.org/dcmqi/#/seg.CMET-MRhead
(it will be in that folder if you downloaded the dataset using the link on top of this page), segmentations in the files as specified on top, and your metadata JSON in meta.json
, you should be able to run this command line to do the conversion:freesurfer_seg.dcm
!QuantitativeReporting
extension of 3D Slicer installed! Without this extension, 3D Slicer will not know how to interpret DICOM SEG data!QuantitativeReporting
is installed, import the directory with the freesurfer_seg.dcm
file. You should then see a new series with modality SEG
in the DICOM Browser:dcmqi
to store segmentations in a compressed form: https://github.com/QIICR/dcmqi/issues/244​