segimage2itkimage
segimage2itkimage
segimage2itkimage
This tool can be used to convert DICOM Segmentation into volumetric segmentations stored as labeled pixels using research format, such as NRRD or NIfTI, and meta information stored in the JSON file format.
Usage
Examples of DICOM Segmentation objects
If you are looking for publicly available examples of segmentation objects, or other DICOM images, you should check out NCI Imaging Data Commons (IDC) (see documentation here).
Here are some representative examples of DICOM Segmentations:
Segmentation of a lung nodule from the DICOM-LIDC-IDRI-Nodules collection
TotalSegmentator segmentation results from the TotalSegmentator-CT-Segmentations collection
To download the files for the studies listed above:
install
idc-index
package withpip install --upgrade idc-index
download the study by specifying
StudyInstanceUID
(listed in the URLs above after the '=' sign) withidc download 1.2.840.113654.2.55.256011367872217445472654886973509892961
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